(function(){if(typeof(window.org)==="undefined"){window.org={}}if(typeof(window.org.cytoscapeweb)==="undefined"){org.cytoscapeweb={}}window._cytoscapeWebInstances={index:0};org.cytoscapeweb.Visualization=function(a,b){this.containerId=a;if(!b){b={}}this.options=b;this.idToken=b.idToken?b.idToken:"cytoscapeWeb";this.swfPath=b.swfPath?b.swfPath:"CytoscapeWeb";this.flashInstallerPath=b.flashInstallerPath?b.flashInstallerPath:"playerProductInstall";this.flashAlternateContent=b.flashAlternateContent?b.flashAlternateContent:"This content requires the Adobe Flash Player. <a href=http://www.adobe.com/go/getflash/>Get Flash</a>";_cytoscapeWebInstances.index++;this.id=this.idToken+_cytoscapeWebInstances.index;_cytoscapeWebInstances[this.id]=this};org.cytoscapeweb.Visualization.prototype={draw:function(a){if(!a){a={}}this.drawOptions=a;this.embedSWF();return this},ready:function(a){if(!a){this._onReady=function(){}}else{this._onReady=a}return this},layout:function(){var a=this.swf();if(arguments.length>0){a.applyLayout(arguments[0]);return this}else{return a.getLayout()}},visualStyle:function(){var a=this.swf();if(arguments.length>0){a.setVisualStyle(arguments[0]);return this}else{return a.getVisualStyle()}},visualStyleBypass:function(){var b=this.swf();var a;if(arguments.length>0){a=JSON.stringify(arguments[0]);b.setVisualStyleBypass(a);return this}else{a=b.getVisualStyleBypass();return this._parseJSON(a)}},panZoomControlVisible:function(){var a=this.swf();if(arguments.length>0){a.showPanZoomControl(arguments[0]);return this}else{return a.isPanZoomControlVisible()}},edgesMerged:function(){var a=this.swf();if(arguments.length>0){a.mergeEdges(arguments[0]);return this}else{return a.isEdgesMerged()}},nodeLabelsVisible:function(){var a=this.swf();if(arguments.length>0){a.showNodeLabels(arguments[0]);return this}else{return a.isNodeLabelsVisible()}},edgeLabelsVisible:function(){var a=this.swf();if(arguments.length>0){a.showEdgeLabels(arguments[0]);return this}else{return a.isEdgeLabelsVisible()}},nodeTooltipsEnabled:function(){var a=this.swf();if(arguments.length>0){a.enableNodeTooltips(arguments[0]);return this}else{return a.isNodeTooltipsEnabled()}},edgeTooltipsEnabled:function(){var a=this.swf();if(arguments.length>0){a.enableEdgeTooltips(arguments[0]);return this}else{return a.isEdgeTooltipsEnabled()}},customCursorsEnabled:function(){if(arguments.length>0){this.swf().enableCustomCursors(arguments[0]);return this}else{return this.swf().isCustomCursorsEnabled()}},panEnabled:function(){if(arguments.length>0){this.swf().enableGrabToPan(arguments[0]);return this}else{return this.swf().isGrabToPanEnabled()}},panBy:function(b,a){this.swf().panBy(b,a);return this},panToCenter:function(){this.swf().panToCenter();return this},zoom:function(){var a=this.swf();if(arguments.length>0){a.zoomTo(arguments[0]);return this}else{return a.getZoom()}},zoomToFit:function(){this.swf().zoomToFit();return this},node:function(b){var a=this.swf().getNodeById(b);return this._parseJSON(a)},nodes:function(a){var b=this.swf().getNodes(a);return this._parseJSON(b)},childNodes:function(a){if(a==null){throw ("The 'parent' parameter is mandatory.")}if(typeof a==="object"&&a.hasOwnProperty("data")){if(typeof a.data==="object"){a=a.data.id}}var b=this.swf().getChildNodes(a);return this._parseJSON(b)},parentNodes:function(){var a=this.swf().getParentNodes();return this._parseJSON(a)},edge:function(b){var a=this.swf().getEdgeById(b);return this._parseJSON(a)},edges:function(){var a=this.swf().getEdges();return this._parseJSON(a)},mergedEdges:function(){var a=this.swf().getMergedEdges();return this._parseJSON(a)},addElements:function(){var a,c=false;if(arguments.length>0&&this._typeof(arguments[0])==="array"){a=arguments[0]}if(a==null){throw ("The 'items' object is mandatory.")}if(arguments.length>1&&typeof arguments[1]==="boolean"){c=arguments[1]}var b=this.swf().addElements(a,c);return this._parseJSON(b)},addNode:function(a,g){var c;var f=false;var e=null;var b=2;if(arguments.length>b&&(typeof arguments[b]==="object"||arguments[b]==null)){c=arguments[b++]}if(arguments.length>b&&typeof arguments[b]==="boolean"){f=arguments[b++]}var d=this.swf().addNode(a,g,c,f);return this._parseJSON(d)},addEdge:function(a){var c=false;if(a==null){throw ("The 'data' object is mandatory.")}if(a.source==null){throw ("The 'source' node ID mandatory.")}if(a.target==null){throw ("The 'target' node ID mandatory.")}if(arguments.length>1){c=arguments[1]}var b=this.swf().addEdge(a,c);return this._parseJSON(b)},removeNode:function(a,b){this.swf().removeElements("nodes",[a],b);return this},removeEdge:function(a,b){this.swf().removeElements("edges",[a],b);return this},removeElements:function(){var b,a,c=false;if(arguments.length>=1){if(typeof arguments[0]==="string"){b=arguments[0]}else{if(this._typeof(arguments[0])==="array"){a=arguments[0]}else{if(typeof arguments[0]==="boolean"){c=arguments[0]}}}}if(arguments.length>=2){if(this._typeof(arguments[1])==="array"){a=arguments[1]}else{if(typeof arguments[1]==="boolean"){c=arguments[1]}}}if(arguments.length>2){c=arguments[2]}b=this._normalizeGroup(b);this.swf().removeElements(b,a,c);return this},dataSchema:function(){return this._parseJSON(this.swf().getDataSchema())},addDataField:function(){var a,c,b=0;if(arguments.length>1){a=arguments[b++]}c=arguments[b];if(c==null){throw ("The 'dataField' object is mandatory.")}if(c.name==null){throw ("The 'name' of the data field is mandatory.")}if(c.type==null){throw ("The 'type' of the data field is mandatory.")}a=this._normalizeGroup(a);this.swf().addDataField(a,c);return this},removeDataField:function(){var b,a,c=0;if(arguments.length>1){b=arguments[c++]}a=arguments[c];if(a==null){throw ("The 'name' of the data field is mandatory.")}b=this._normalizeGroup(b);this.swf().removeDataField(b,a);return this},updateData:function(){var b,a,c;if(arguments.length===1){if(typeof arguments[0]==="string"){b=arguments[0]}else{if(this._typeof(arguments[0])==="array"){a=arguments[0]}else{c=arguments[0]}}}else{if(arguments.length===2){if(typeof arguments[0]==="string"){b=arguments[0];if(this._typeof(arguments[1])==="array"){a=arguments[1]}else{c=arguments[1]}}else{a=arguments[0];c=arguments[1]}}else{if(arguments.length>2){b=arguments[0];a=arguments[1];c=arguments[2]}}}b=this._normalizeGroup(b);this.swf().updateData(b,a,c);return this},select:function(){var b,a;if(arguments.length===1){if(typeof arguments[0]==="string"){b=arguments[0]}else{a=arguments[0]}}else{if(arguments.length>1){b=arguments[0];a=arguments[1]}}b=this._normalizeGroup(b);this.swf().select(b,a);return this},selected:function(a){return this._nodesAndEdges(a,"getSelectedNodes","getSelectedEdges")},deselect:function(){var b,a;if(arguments.length===1){if(typeof arguments[0]==="string"){b=arguments[0]}else{a=arguments[0]}}else{if(arguments.length>1){b=arguments[0];a=arguments[1]}}b=this._normalizeGroup(b);this.swf().deselect(b,a);return this},filter:function(){var b,d,a=[],g=false;if(arguments.length>2){b=arguments[0];d=arguments[1];g=arguments[2]}else{if(arguments.length===2){if(typeof arguments[0]==="string"){b=arguments[0];d=arguments[1]}else{d=arguments[0];g=arguments[1]}}else{if(arguments.length===1){d=arguments[0]}}}b=this._normalizeGroup(b);if(typeof d==="function"){var e=this._nodesAndEdges(b,"getNodes","getEdges");if(e.length>0){for(var c=0;c<e.length;c++){var f=e[c];if(d(f)){a.push(f.data.id)}}}}else{if(this._typeof(d)==="array"){a=d}}this.swf().filter(b,a,g);return this},removeFilter:function(a,b){a=this._normalizeGroup(a);this.swf().removeFilter(a,b);return this},firstNeighbors:function(b,a){var c=this.swf().firstNeighbors(b,a);return this._parseJSON(c)},networkModel:function(){var a=this.swf().getNetworkModel();return this._parseJSON(a)},graphml:function(){return this.swf().getNetworkAsText("graphml")},xgmml:function(){return this.swf().getNetworkAsText("xgmml")},sif:function(a){return this.swf().getNetworkAsText("sif",a)},pdf:function(a){return this.swf().getNetworkAsImage("pdf",a)},svg:function(a){return this.swf().getNetworkAsImage("svg",a)},png:function(){return this.swf().getNetworkAsImage("png")},exportNetwork:function(c,b,a){c=c.toLowerCase().trim();this.swf().exportNetwork(c,b,a);return this},addListener:function(a,f){var d;if(arguments.length>2){d=arguments[1];f=arguments[2]}a=this._normalizeEvent(a);d=this._normalizeGroup(d);if(!this._listeners){this._listeners={}}if(!this._listeners[d]){this._listeners[d]={}}var c=this._listeners[d][a];if(!c){c=[];this._listeners[d][a]=c}var b=false;for(var e=0;e<c.length;e++){if(f===c[e]){b=true;break}}if(!b){c.push(f)}return this},removeListener:function(b){var d;var f;if(arguments.length>2){d=arguments[1];f=arguments[2]}else{if(arguments.length===2){if(typeof arguments[1]==="function"){f=arguments[1]}else{d=arguments[1]}}}b=this._normalizeEvent(b);d=this._normalizeGroup(d);var a;if(this._listeners){a=this._listeners[d]}if(a){if(!f){delete a[b]}else{var c=a[b];if(c){for(var e=0;e<c.length;e++){if(f===c[e]){c.splice(e,1);break}}}}}return this},hasListener:function(b){var e=false;var d;if(arguments.length>1){d=arguments[1]}b=this._normalizeEvent(b);d=this._normalizeGroup(d);if(this._listeners){var a=this._listeners[d];if(a){var c=a[b];e=c&&c.length>0}}return e},addContextMenuItem:function(d,c){if(d&&c){var b;if(arguments.length>2){b=arguments[1];c=arguments[2]}b=this._normalizeGroup(b);if(!this._contextMenuItems){this._contextMenuItems={}}var a=this._contextMenuItems[b];if(!a){a={};this._contextMenuItems[b]=a}a[d]=c;this.swf().addContextMenuItem(d,b)}return this},removeContextMenuItem:function(c){if(c){var b;if(arguments.length>1){b=arguments[1]}b=this._normalizeGroup(b);if(this._contextMenuItems){var a=this._contextMenuItems[b];if(a){if(a[c]){this.swf().removeContextMenuItem(c,b);delete a[c]}}}}return this},removeAllContextMenuItems:function(){if(this._contextMenuItems){for(var b in this._contextMenuItems){if(this._contextMenuItems.hasOwnProperty(b)){var a=this._contextMenuItems[b];if(a){for(var c in a){if(a.hasOwnProperty(c)){this.removeContextMenuItem(c,b)}}}}}}return this},swf:function(){if(navigator.appName.indexOf("Microsoft")!==-1){return window[this.id]}else{return document[this.id]}},embedSWF:function(){var c=10;var l=0;var j=0;var h=this.containerId;AC_Generateobj=function(s,r,o){var q="";var p;if(isIE&&isWin&&!isOpera){q+="<object ";for(p in s){if(Object.hasOwnProperty.call(s,p)){q+=p+'="'+s[p]+'" '}}q+=">";for(p in r){if(Object.hasOwnProperty.call(r,p)){q+='<param name="'+p+'" value="'+r[p]+'" /> '}}q+="</object>"}else{q+="<embed ";for(p in o){if(Object.hasOwnProperty.call(o,p)){q+=p+'="'+o[p]+'" '}}q+="> </embed>"}document.getElementById(h).innerHTML=q};var g=DetectFlashVer(6,0,65);var d=DetectFlashVer(c,l,j);if(g&&!d){var b=(isIE===true)?"ActiveX":"PlugIn";var a=window.location;document.title=document.title.slice(0,47)+" - Flash Player Installation";var e=document.title;AC_FL_RunContent("src",this.flashInstallerPath,"FlashVars","MMredirectURL="+a+"&MMplayerType="+b+"&MMdoctitle="+e+"","width","100%","height","100%","align","middle","id",this.id,"quality","high","bgcolor","#ffffff","name",this.id,"allowScriptAccess","always","type","application/x-shockwave-flash","pluginspage","http://www.adobe.com/go/getflashplayer")}else{if(d){var n=["resourceBundleUrl"];var k="";if(this.options){for(var f in n){if(Object.hasOwnProperty.call(n,f)){var m=n[f];if(this.options[m]!==undefined){k+=m+"="+this.options[m]+"&"}}}k+="id="+this.id}AC_FL_RunContent("src",this.swfPath,"width","100%","height","100%","align","middle","id",this.id,"quality","high","bgcolor","#ffffff","name",this.id,"allowScriptAccess","always","type","application/x-shockwave-flash","pluginspage","http://www.adobe.com/go/getflashplayer","wmode","opaque","flashVars",k)}else{document.getElementById(h).innerHTML=this.flashAlternateContent}}return this},_onBeforeComplete:function(){var b=window.__flash__addCallback;window.__flash__addCallback=function(d,e){try{b(d,e)}catch(c){}};var a=window.__flash__removeCallback;window.__flash__removeCallback=function(d,e){try{a(d,e)}catch(c){}}},_onComplete:function(){this.swf().draw(this.drawOptions)},_onReady:function(){},_dispatch:function(d,b){var a=null;if(b!=null){a=this._parseJSON(b)}var c=this[d](a);return c},_hasListener:function(a){return this.hasListener(a.type,a.group)},_invokeListeners:function(b){if(this._listeners){var d=this._normalizeGroup(b.group);var a=this._listeners[d];if(a){var f=this._normalizeEvent(b.type);var c=a[f];for(var e=0;e<c.length;e++){c[e](b)}}}},_invokeContextMenuCallback:function(b){if(this._contextMenuItems){var c=this._normalizeGroup(b.group);var a=this._contextMenuItems[c];if(a){b=new org.cytoscapeweb.Event(b);var d=a[b.value];if(d){d(b)}}}},_normalizeEvent:function(a){if(a){a=a.toLowerCase().trim()}return a},_normalizeGroup:function(a){if(a){a=a.toLowerCase().trim()}if(a!=="nodes"&&a!=="edges"){a="none"}return a},_nodesAndEdges:function(e,b,a){var f=[];e=this._normalizeGroup(e);if(e==="nodes"||e==="none"){var d=this._parseJSON(this.swf()[b]());f=f.concat(d)}if(e==="edges"||e==="none"){var c=this._parseJSON(this.swf()[a]());f=f.concat(c)}return f},_typeof:function(a){if(typeof(a)=="object"){if(a===null){return"null"}if(a.constructor==(new Array).constructor){return"array"}if(a.constructor==(new Date).constructor){return"date"}if(a.constructor==(new RegExp).constructor){return"regex"}return"object"}return typeof(a)},_parseJSON:function(a){if(a!=null){a=a.replace(/\n/g,"\\n").replace(/\t/g,"\\t")}return JSON.parse(a)}};if(!String.prototype.trim){String.prototype.trim=function(){return this.replace(/(?:(?:^|\n)\s+|\s+(?:$|\n))/g,"")}}org.cytoscapeweb.Event=function(a){this.type=a.type;this.group=a.group;this.target=a.target;this.value=a.value;this.mouseX=a.mouseX;this.mouseY=a.mouseY}})();